PH01000243G0710's details annotation
1.Annotation
ICBR annotation: DNA-binding bromodomain-containing protein, putative, expressed
Blast result AT5G66005 : 1.80E-41
Blast annotation: Expressed protein
2.Location
Scaffold: PH01000243
Strand: +
| Region | Start | End |
| gene | 398118 | 401413 |
| mRNA | 398118 | 401413 |
| exon | 398118 | 398494 |
| exon | 398764 | 398854 |
| exon | 399776 | 399860 |
| exon | 400060 | 400216 |
| exon | 401235 | 401413 |
| CDS | 398263 | 398494 |
| CDS | 398764 | 398854 |
| CDS | 399776 | 399860 |
| CDS | 400060 | 400216 |
| CDS | 401235 | 401302 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03266.14 | NTPase_1 | 77 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Thiamine metabolism | nucleoside-triphosphatase THEP1 [EC:3.6.1.15] | ko00730 | K06928 |
| Purine metabolism | nucleoside-triphosphatase THEP1 [EC:3.6.1.15] | ko00230 | K06928 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016740 | transferase activity |
| GO:0019204 | nucleotide phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.