Annotation of co-expression genes

PH01000243G1340's details annotation

1.Annotation

ICBR annotation: glycosyl transferase, group 1 domain containing protein, expressed

Blast result AT3G45100 : 0.00E+00
Blast annotation: UDP-Glycosyltransferase superfamily protein

2.Location

Scaffold: PH01000243
Strand: -

RegionStartEnd
gene833700837995
mRNA833700837995
exon833700833842
exon834445834535
exon834752834855
exon834997835113
exon835216835306
exon836068836222
exon836523837095
exon837390837995
CDS833756833842
CDS834445834535
CDS834752834855
CDS834997835113
CDS835216835306
CDS836068836222
CDS836523837095
CDS837390837512

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001318RLK-Pelle_RLCK-XI (from iTAK)
GT4 GlycosylTransferases
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
Rab GDP-dissociation inhibitor activity,
GPI anchor biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT4

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08288.11PIGA47136
PF00534.19Glycos_transf_1200340

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycosylphosphatidylinositol(GPI)-anchor biosynthesisphosphatidylinositol glycan, class A [EC:2.4.1.198]ko00563K03857

10.Gene Ontology

GO AccessionGO Annotation
GO:0006506GPI anchor biosynthetic process
GO:0009058biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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