PH01000245G0080's details annotation
1.Annotation
ICBR annotation: mediator of RNA polymerase II transcription subunit 6, putative, expressed
Blast result AT3G21350 : 8.40E-43
Blast annotation: RNA polymerase transcriptional regulation mediator-related
2.Location
Scaffold: PH01000245
Strand: -
| Region | Start | End |
| gene | 47865 | 54642 |
| mRNA | 47865 | 54642 |
| exon | 47865 | 48812 |
| exon | 49091 | 49200 |
| exon | 50062 | 50139 |
| exon | 51014 | 51083 |
| exon | 51287 | 51461 |
| exon | 53191 | 54642 |
| CDS | 48648 | 48812 |
| CDS | 49091 | 49200 |
| CDS | 50062 | 50139 |
| CDS | 51014 | 51083 |
| CDS | 51287 | 51461 |
| CDS | 53191 | 53621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001177 | MED6 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, metabolic process, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MED6 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04934.13 | Med6 | 144 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001104 | RNA polymerase II transcription cofactor activity |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0016592 | mediator complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.