PH01000246G0130's details annotation
1.Annotation
ICBR annotation: AMP-binding enzyme family protein, expressed
Blast result AT5G35930 : 6.50E-18
Blast annotation: AMP-dependent synthetase and ligase family protein
2.Location
Scaffold: PH01000246
Strand: +
| Region | Start | End |
| gene | 82162 | 88042 |
| mRNA | 82162 | 88042 |
| exon | 82162 | 82687 |
| exon | 83705 | 83764 |
| exon | 83878 | 83958 |
| exon | 84010 | 84054 |
| exon | 85773 | 85873 |
| exon | 85942 | 86098 |
| exon | 86128 | 86282 |
| exon | 86332 | 86481 |
| exon | 86565 | 88042 |
| CDS | 82682 | 82687 |
| CDS | 83705 | 83764 |
| CDS | 83878 | 83958 |
| CDS | 84010 | 84054 |
| CDS | 85773 | 85873 |
| CDS | 85942 | 86098 |
| CDS | 86128 | 86282 |
| CDS | 86332 | 86481 |
| CDS | 86565 | 86673 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01011.20 | PQQ | 49 | 79 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.