PH01000250G0640's details annotation
1.Annotation
ICBR annotation: esterase/lipase/thioesterase, putative, expressed
Blast result AT3G27325 : 1.00E-149
Blast annotation: hydrolases, acting on ester bonds
2.Location
Scaffold: PH01000250
Strand: -
| Region | Start | End |
| gene | 521341 | 537547 |
| mRNA | 521341 | 537547 |
| exon | 521341 | 522631 |
| exon | 523938 | 524193 |
| exon | 524445 | 524611 |
| exon | 524680 | 524761 |
| exon | 525770 | 526098 |
| exon | 526636 | 526722 |
| exon | 527480 | 527643 |
| exon | 527973 | 528114 |
| exon | 528158 | 528335 |
| exon | 528735 | 528772 |
| exon | 531219 | 531329 |
| exon | 531888 | 532070 |
| exon | 533389 | 533445 |
| exon | 534118 | 534277 |
| exon | 534415 | 534605 |
| exon | 534944 | 535180 |
| exon | 535967 | 537547 |
| CDS | 522296 | 522631 |
| CDS | 523938 | 524193 |
| CDS | 524445 | 524611 |
| CDS | 524680 | 524761 |
| CDS | 525770 | 526098 |
| CDS | 526636 | 526722 |
| CDS | 527480 | 527643 |
| CDS | 527973 | 528114 |
| CDS | 528158 | 528335 |
| CDS | 528735 | 528772 |
| CDS | 531219 | 531329 |
| CDS | 531888 | 532070 |
| CDS | 533389 | 533445 |
| CDS | 534118 | 534277 |
| CDS | 534415 | 534605 |
| CDS | 534944 | 535180 |
| CDS | 535967 | 536257 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001356 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis GPI anchor metabolic process, regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07819.12 | PGAP1 | 80 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | glycosylphosphatidylinositol deacylase [EC:3.-.-.-] | ko00563 | K05294 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006505 | GPI anchor metabolic process |
| GO:0006886 | intracellular protein transport |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.