PH01000250G0780's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G05970 : 1.00E-148
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000250
Strand: +
| Region | Start | End |
| gene | 644790 | 653097 |
| mRNA | 644790 | 653097 |
| exon | 644790 | 645402 |
| exon | 646030 | 646329 |
| exon | 646474 | 646523 |
| exon | 647250 | 647376 |
| exon | 647463 | 647684 |
| exon | 648506 | 649027 |
| exon | 649138 | 649197 |
| exon | 649308 | 649874 |
| exon | 649959 | 650141 |
| exon | 651311 | 653097 |
| CDS | 645334 | 645402 |
| CDS | 646030 | 646329 |
| CDS | 646474 | 646523 |
| CDS | 647250 | 647376 |
| CDS | 647463 | 647684 |
| CDS | 648506 | 649027 |
| CDS | 649138 | 649197 |
| CDS | 649308 | 649874 |
| CDS | 649959 | 650141 |
| CDS | 651311 | 651421 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001418 | membrane, proton transport, Ether_lipid_metabolism inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Glycerophospholipid_metabolism Oxidative_phosphorylation |
| coexpression network | CFinderM001651 | clathrin adaptor complex, COPI vesicle coat, retrograde vesicle-mediated transport, Golgi to ER, inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Ether_lipid_metabolism proton transport, Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.