PH01000252G0840's details annotation
1.Annotation
ICBR annotation: tRNA synthetase, putative, expressed
Blast result AT2G25840 : 3.00E-144
Blast annotation: Nucleotidylyl transferase superfamily protein
2.Location
Scaffold: PH01000252
Strand: -
| Region | Start | End |
| gene | 652071 | 658517 |
| mRNA | 652071 | 658517 |
| exon | 652071 | 652904 |
| exon | 653086 | 653175 |
| exon | 654019 | 654100 |
| exon | 654193 | 654239 |
| exon | 654368 | 654424 |
| exon | 654659 | 654724 |
| exon | 654822 | 654843 |
| exon | 654936 | 655048 |
| exon | 655199 | 655270 |
| exon | 656112 | 656234 |
| exon | 656332 | 656421 |
| exon | 656868 | 656909 |
| exon | 657195 | 657282 |
| exon | 658073 | 658192 |
| exon | 658301 | 658517 |
| CDS | 652770 | 652904 |
| CDS | 653086 | 653175 |
| CDS | 654019 | 654100 |
| CDS | 654193 | 654239 |
| CDS | 654368 | 654424 |
| CDS | 654659 | 654724 |
| CDS | 654822 | 654843 |
| CDS | 654936 | 655048 |
| CDS | 655199 | 655270 |
| CDS | 656112 | 656234 |
| CDS | 656332 | 656421 |
| CDS | 656868 | 656909 |
| CDS | 657195 | 657282 |
| CDS | 658073 | 658192 |
| CDS | 658301 | 658353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000709 | ADP_binding defense response, RLK-Pelle_LRK10L-2 (from iTAK) tryptophanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tryptophan-tRNA ligase activity, cullin-RING ubiquitin ligase complex, regulation of ARF GTPase activity, |
| coexpression network | CFinderM000988 | ADP_binding defense response, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM000996 | ADP_binding defense response, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00579.24 | tRNA-synt_1b | 57 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | tryptophanyl-tRNA synthetase [EC:6.1.1.2] | ko00970 | K01867 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004830 | tryptophan-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
| GO:0006436 | tryptophanyl-tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.