PH01000254G0780's details annotation
1.Annotation
ICBR annotation: chloroplast unusual positioning protein, putative, expressed
Blast result AT3G25690 : 4.00E-139
Blast annotation: Hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01000254
Strand: -
| Region | Start | End |
| gene | 558096 | 564198 |
| mRNA | 558096 | 564198 |
| exon | 558096 | 558989 |
| exon | 559384 | 559506 |
| exon | 559693 | 559804 |
| exon | 559962 | 560143 |
| exon | 560262 | 560393 |
| exon | 560537 | 561850 |
| exon | 562479 | 563204 |
| exon | 563289 | 564198 |
| CDS | 558831 | 558989 |
| CDS | 559384 | 559506 |
| CDS | 559693 | 559804 |
| CDS | 559962 | 560143 |
| CDS | 560262 | 560393 |
| CDS | 560537 | 561850 |
| CDS | 562479 | 563204 |
| CDS | 563289 | 563339 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.