PH01000254G1090's details annotation
1.Annotation
ICBR annotation: polygalacturonase, putative, expressed
Blast result AT1G10640 : 1.00E-124
Blast annotation: Pectin lyase-like superfamily protein
2.Location
Scaffold: PH01000254
Strand: -
| Region | Start | End |
| gene | 783445 | 790063 |
| mRNA | 783445 | 790063 |
| exon | 783445 | 785166 |
| exon | 786750 | 786940 |
| exon | 787271 | 787478 |
| exon | 787567 | 787608 |
| exon | 787697 | 787864 |
| exon | 788353 | 788484 |
| exon | 789547 | 790063 |
| CDS | 784912 | 785166 |
| CDS | 786750 | 786940 |
| CDS | 787271 | 787478 |
| CDS | 787567 | 787608 |
| CDS | 787697 | 787864 |
| CDS | 788353 | 788484 |
| CDS | 789547 | 789999 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00295.16 | Glyco_hydro_28 | 164 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.