Annotation of co-expression genes

PH01000256G0260's details annotation

1.Annotation

ICBR annotation: suppressor of G2 allele of SKP1, putative, expressed

Blast result AT4G11260 : 5.00E-117
Blast annotation: phosphatase-related

2.Location

Scaffold: PH01000256
Strand: -

RegionStartEnd
gene181882189311
mRNA181882189311
exon181882182495
exon182633182737
exon182834182916
exon184181184319
exon185517185582
exon185664185760
exon186049186205
exon186553186677
exon186785186854
exon189033189311
CDS182388182495
CDS182633182737
CDS182834182916
CDS184181184319
CDS185517185582
CDS185664185760
CDS186049186205
CDS186553186677
CDS186785186854
CDS189033189201

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000974CMGC_CDKL-Os (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
Glycerolipid_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13432.5TPR_161171
PF04969.15CS174249
PF05002.14SGS290370

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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