Annotation of co-expression genes

PH01000258G0330's details annotation

1.Annotation

ICBR annotation: tRNA synthetases class II domain containing protein, expressed

Blast result AT5G56680 : 0.00E+00
Blast annotation: Class II aminoacyl-tRNA and biotin synthetases superfamily protein

2.Location

Scaffold: PH01000258
Strand: -

RegionStartEnd
gene219024223673
mRNA219024223673
exon219024219550
exon220145220203
exon220432220561
exon220643223673
CDS219367219550
CDS220145220203
CDS220432220561
CDS220643220818

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01336.24tRNA_anti-codon49125
PF00152.19tRNA-synt_2147208
PF00458.19WHEP-TRS238276
PF00152.19tRNA-synt_2296557

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisasparaginyl-tRNA synthetase [EC:6.1.1.22]ko00970K01893

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004816asparagine-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation
GO:0006421asparaginyl-tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.