PH01000258G0940's details annotation
1.Annotation
ICBR annotation: OsGH3.6 - Probable indole-3-acetic acid-amido synthetase, expressed
Blast result AT1G59500 : 7.40E-63
Blast annotation: Auxin-responsive GH3 family protein
2.Location
Scaffold: PH01000258
Strand: +
| Region | Start | End |
| gene | 635448 | 638347 |
| mRNA | 635448 | 638347 |
| exon | 635448 | 636319 |
| exon | 636578 | 637711 |
| exon | 638035 | 638347 |
| CDS | 636009 | 636319 |
| CDS | 636578 | 637711 |
| CDS | 638035 | 638134 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000138 | RLK-Pelle_LRR-Xa (from iTAK) GRAS Transcription_Regulator(from PlantTFDB) vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03321.12 | GH3 | 13 | 102 |
| PF03321.12 | GH3 | 113 | 469 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | auxin responsive GH3 gene family | ko04075 | K14487 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.