PH01000259G0240's details annotation
1.Annotation
ICBR annotation: calcium-transporting ATPase, plasma membrane-type, putative, expressed
Blast result AT3G21180 : 4.80E-99
Blast annotation: autoinhibited Ca(2+)-ATPase 9
2.Location
Scaffold: PH01000259
Strand: -
| Region | Start | End |
| gene | 178064 | 187108 |
| mRNA | 178064 | 187108 |
| exon | 178064 | 180269 |
| exon | 180348 | 180672 |
| exon | 182667 | 182801 |
| exon | 183059 | 183163 |
| exon | 183366 | 183503 |
| exon | 183913 | 184011 |
| exon | 184122 | 184238 |
| exon | 184519 | 184683 |
| exon | 185278 | 187108 |
| CDS | 179596 | 180269 |
| CDS | 180348 | 180672 |
| CDS | 182667 | 182801 |
| CDS | 183059 | 183163 |
| CDS | 183366 | 183503 |
| CDS | 183913 | 184011 |
| CDS | 184122 | 184238 |
| CDS | 184519 | 184683 |
| CDS | 185278 | 185394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000920 | Nicotinate_and_nicotinamide_metabolism Fatty_acid_metabolism inositol tetrakisphosphate 1-kinase activity, inositol-1,3,4-trisphosphate_5-kinase_activity inositol-1,3,4-trisphosphate_6-kinase_activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, Peroxisome inositol trisphosphate metabolic process, nitrogen compound metabolic process, antiporter activity, drug transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00702.25 | Hydrolase | 41 | 135 |
| PF00689.20 | Cation_ATPase_C | 206 | 295 |
| PF08284.10 | RVP_2 | 427 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.