Annotation of co-expression genes

PH01000260G0040's details annotation

1.Annotation

ICBR annotation: peptide transporter PTR2, putative, expressed

Blast result AT5G13400 : 4.80E-96
Blast annotation: Major facilitator superfamily protein

2.Location

Scaffold: PH01000260
Strand: +

RegionStartEnd
gene2509628252
mRNA2509628252
exon2509625820
exon2689128252
CDS2525525820
CDS2689127785

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000516oligopeptide transport,
nitrogen compound metabolic process,
coexpression networkCFinderM001514transferase activity, transferring hexosyl groups,
metabolic process,
oligopeptide transport,
coexpression networkCFinderM001538oligopeptide transport,
transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00854.20PTR2212418

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0006857oligopeptide transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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