PH01000260G0580's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol 3- and 4-kinase family protein, expressed
Blast result AT3G48190 : 4.00E-130
Blast annotation: ataxia-telangiectasia mutated
2.Location
Scaffold: PH01000260
Strand: +
| Region | Start | End |
| gene | 404153 | 415540 |
| mRNA | 404153 | 415540 |
| exon | 404153 | 404908 |
| exon | 407283 | 407484 |
| exon | 407703 | 407786 |
| exon | 409875 | 409958 |
| exon | 410569 | 410649 |
| exon | 410732 | 410821 |
| exon | 411674 | 411814 |
| exon | 411930 | 411986 |
| exon | 412073 | 412132 |
| exon | 412485 | 412579 |
| exon | 412669 | 412777 |
| exon | 414426 | 415540 |
| CDS | 404733 | 404908 |
| CDS | 407283 | 407484 |
| CDS | 407703 | 407786 |
| CDS | 409875 | 409958 |
| CDS | 410569 | 410649 |
| CDS | 410732 | 410821 |
| CDS | 411674 | 411814 |
| CDS | 411930 | 411986 |
| CDS | 412073 | 412132 |
| CDS | 412485 | 412579 |
| CDS | 412669 | 412777 |
| CDS | 414426 | 414803 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000077 | DNA damage checkpoint |
| GO:0000723 | telomere maintenance |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0006281 | DNA repair |
| GO:0006974 | response to DNA damage stimulus |
| GO:0010212 | response to ionizing radiation |
| GO:0016572 | histone phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0090399 | replicative senescence |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.