PH01000260G1080's details annotation
1.Annotation
ICBR annotation: HD domain containing protein 2, putative, expressed
Blast result AT5G40270 : 4.00E-133
Blast annotation: HD domain-containing metal-dependent phosphohydrolase family protein
2.Location
Scaffold: PH01000260
Strand: +
| Region | Start | End |
| gene | 683009 | 693804 |
| mRNA | 683009 | 693804 |
| exon | 683009 | 684087 |
| exon | 685556 | 685575 |
| exon | 685879 | 685916 |
| exon | 686018 | 686040 |
| exon | 686649 | 686755 |
| exon | 686844 | 686895 |
| exon | 686964 | 687048 |
| exon | 687519 | 687609 |
| exon | 688115 | 688153 |
| exon | 688250 | 688317 |
| exon | 688420 | 688482 |
| exon | 689068 | 689127 |
| exon | 689960 | 690110 |
| exon | 690649 | 690729 |
| exon | 690823 | 691035 |
| exon | 691443 | 691529 |
| exon | 691620 | 691682 |
| exon | 692272 | 692382 |
| exon | 692473 | 693804 |
| CDS | 683961 | 684087 |
| CDS | 685556 | 685575 |
| CDS | 685879 | 685916 |
| CDS | 686018 | 686040 |
| CDS | 686649 | 686755 |
| CDS | 686844 | 686895 |
| CDS | 686964 | 687048 |
| CDS | 687519 | 687609 |
| CDS | 688115 | 688153 |
| CDS | 688250 | 688317 |
| CDS | 688420 | 688482 |
| CDS | 689068 | 689127 |
| CDS | 689960 | 690110 |
| CDS | 690649 | 690729 |
| CDS | 690823 | 691035 |
| CDS | 691443 | 691529 |
| CDS | 691620 | 691682 |
| CDS | 692272 | 692382 |
| CDS | 692473 | 692577 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01966.21 | HD | 83 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008081 | phosphoric diester hydrolase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.