PH01000260G1120's details annotation
1.Annotation
ICBR annotation: transcriptional repressor, putative, expressed
Blast result AT1G24190 : 0.00E+00
Blast annotation: SIN3-like 3
2.Location
Scaffold: PH01000260
Strand: -
| Region | Start | End |
| gene | 705198 | 716679 |
| mRNA | 705198 | 716679 |
| exon | 705198 | 705363 |
| exon | 705449 | 705560 |
| exon | 705642 | 705805 |
| exon | 706011 | 706163 |
| exon | 706247 | 706385 |
| exon | 706473 | 706573 |
| exon | 706646 | 707317 |
| exon | 707637 | 707722 |
| exon | 707821 | 708483 |
| exon | 708576 | 708830 |
| exon | 708930 | 709057 |
| exon | 709988 | 710142 |
| exon | 710225 | 710487 |
| exon | 710575 | 710604 |
| exon | 710701 | 710776 |
| exon | 710914 | 711047 |
| exon | 711577 | 711652 |
| exon | 711790 | 712005 |
| exon | 712290 | 712568 |
| exon | 713125 | 713295 |
| exon | 713386 | 713484 |
| exon | 713578 | 713746 |
| exon | 713866 | 714076 |
| exon | 714445 | 716679 |
| CDS | 705214 | 705363 |
| CDS | 705449 | 705560 |
| CDS | 705642 | 705805 |
| CDS | 706011 | 706163 |
| CDS | 706247 | 706385 |
| CDS | 706473 | 706573 |
| CDS | 706646 | 707317 |
| CDS | 707637 | 707722 |
| CDS | 707821 | 708483 |
| CDS | 708576 | 708830 |
| CDS | 708930 | 709057 |
| CDS | 709988 | 710142 |
| CDS | 710225 | 710487 |
| CDS | 710575 | 710604 |
| CDS | 710701 | 710776 |
| CDS | 710914 | 711047 |
| CDS | 711577 | 711652 |
| CDS | 711790 | 712005 |
| CDS | 712290 | 712568 |
| CDS | 713125 | 713295 |
| CDS | 713386 | 713484 |
| CDS | 713578 | 713746 |
| CDS | 713866 | 714076 |
| CDS | 714445 | 714778 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000814 | DDT Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02671.20 | PAH | 166 | 210 |
| PF02671.20 | PAH | 246 | 290 |
| PF02671.20 | PAH | 469 | 512 |
| PF02671.20 | PAH | 539 | 582 |
| PF08295.11 | Sin3_corepress | 674 | 766 |
| PF16879.4 | Sin3a_C | 1325 | 1573 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.