PH01000260G1250's details annotation
1.Annotation
ICBR annotation: phosphoenolpyruvate carboxylase, putative, expressed
Blast result AT1G68750 : 0.00E+00
Blast annotation: phosphoenolpyruvate carboxylase 4
2.Location
Scaffold: PH01000260
Strand: -
| Region | Start | End |
| gene | 818735 | 835383 |
| mRNA | 818735 | 835383 |
| exon | 818735 | 819685 |
| exon | 819763 | 819969 |
| exon | 820061 | 820187 |
| exon | 821208 | 821293 |
| exon | 821714 | 822712 |
| exon | 823189 | 823276 |
| exon | 823484 | 824112 |
| exon | 824368 | 824542 |
| exon | 826008 | 826096 |
| exon | 826465 | 826563 |
| exon | 827228 | 827374 |
| exon | 827496 | 827597 |
| exon | 827787 | 827852 |
| exon | 828419 | 828544 |
| exon | 828910 | 829125 |
| exon | 829481 | 829542 |
| exon | 829881 | 830021 |
| exon | 830246 | 830387 |
| exon | 830536 | 830631 |
| exon | 830716 | 830792 |
| exon | 830875 | 830953 |
| exon | 831049 | 831117 |
| exon | 831306 | 831383 |
| exon | 831486 | 831600 |
| exon | 832462 | 832625 |
| exon | 832735 | 835383 |
| CDS | 818861 | 819685 |
| CDS | 819763 | 819969 |
| CDS | 820061 | 820187 |
| CDS | 821208 | 821293 |
| CDS | 821714 | 822712 |
| CDS | 823189 | 823276 |
| CDS | 823484 | 824112 |
| CDS | 824368 | 824542 |
| CDS | 826008 | 826096 |
| CDS | 826465 | 826563 |
| CDS | 827228 | 827374 |
| CDS | 827496 | 827597 |
| CDS | 827787 | 827852 |
| CDS | 828419 | 828544 |
| CDS | 828910 | 829125 |
| CDS | 829481 | 829542 |
| CDS | 829881 | 830021 |
| CDS | 830246 | 830387 |
| CDS | 830536 | 830631 |
| CDS | 830716 | 830792 |
| CDS | 830875 | 830953 |
| CDS | 831049 | 831117 |
| CDS | 831306 | 831383 |
| CDS | 831486 | 831600 |
| CDS | 832462 | 832625 |
| CDS | 832735 | 832890 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00311.16 | PEPcase | 145 | 324 |
| PF00311.16 | PEPcase | 445 | 513 |
| PF00311.16 | PEPcase | 528 | 662 |
| PF08284.10 | RVP_2 | 776 | 867 |
| PF00311.16 | PEPcase | 1333 | 1719 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyruvate metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00620 | K01595 |
| Carbon fixation in photosynthetic organisms | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00710 | K01595 |
| Carbon fixation pathways in prokaryotes | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00720 | K01595 |
| Methane metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00680 | K01595 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003824 | catalytic activity |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006099 | tricarboxylic acid cycle |
| GO:0006508 | proteolysis |
| GO:0008964 | phosphoenolpyruvate carboxylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.