Annotation of co-expression genes

PH01000261G1090's details annotation

1.Annotation

ICBR annotation: Myb transcription factor, putative, expressed

Blast result AT3G04030 : 6.00E-82
Blast annotation: Homeodomain-like superfamily protein

2.Location

Scaffold: PH01000261
Strand: -

RegionStartEnd
gene669562675913
mRNA669562675913
exon669562671104
exon671473671542
exon671621671708
exon671786671843
exon671924672000
exon672075672285
exon673100673135
exon674861674910
exon675153675913
CDS670355671104
CDS671473671542
CDS671621671708
CDS671786671843
CDS671924672000
CDS672075672285
CDS673100673135
CDS674861674910
CDS675153675219

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001254GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
Others Transcription_Regulator(from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GARP-G2-like
Transcription_Regulator(from PlantTFDB)G2-like

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding99150
PF14379.5Myb_CC_LHEQLE198245

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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