PH01000263G0680's details annotation
1.Annotation
ICBR annotation: phosphatidate cytidylyltransferase, putative, expressed
Blast result AT1G62430 : 2.00E-100
Blast annotation: CDP-diacylglycerol synthase 1
2.Location
Scaffold: PH01000263
Strand: -
| Region | Start | End |
| gene | 427199 | 435947 |
| mRNA | 427199 | 435947 |
| exon | 427199 | 427777 |
| exon | 428619 | 428675 |
| exon | 428775 | 428903 |
| exon | 431889 | 431975 |
| exon | 432073 | 432120 |
| exon | 432377 | 432533 |
| exon | 433236 | 433427 |
| exon | 433878 | 433906 |
| exon | 434356 | 434448 |
| exon | 434986 | 435077 |
| exon | 435374 | 435947 |
| CDS | 427688 | 427777 |
| CDS | 428619 | 428675 |
| CDS | 428775 | 428903 |
| CDS | 431889 | 431975 |
| CDS | 432073 | 432120 |
| CDS | 432377 | 432533 |
| CDS | 433236 | 433427 |
| CDS | 433878 | 433906 |
| CDS | 434356 | 434448 |
| CDS | 434986 | 435077 |
| CDS | 435374 | 435404 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000969 | Sulfur_relay_system Cysteine_and_methionine_metabolism Phosphatidylinositol_signaling_system Glycerophospholipid_metabolism cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01148.19 | CTP_transf_1 | 98 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | phosphatidate cytidylyltransferase [EC:2.7.-.-] | ko00564 | K00981 |
| Phosphatidylinositol signaling system | phosphatidate cytidylyltransferase [EC:2.7.7.41] | ko04070 | K00981 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.