PH01000264G1160's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT1G13180 : 4.10E-92
Blast annotation: Actin-like ATPase superfamily protein
2.Location
Scaffold: PH01000264
Strand: +
| Region | Start | End |
| gene | 813513 | 818224 |
| mRNA | 813513 | 818224 |
| exon | 813513 | 814301 |
| exon | 815636 | 815728 |
| exon | 816153 | 816272 |
| exon | 817075 | 817185 |
| exon | 817285 | 817410 |
| exon | 817560 | 817652 |
| exon | 817882 | 818224 |
| CDS | 813810 | 814301 |
| CDS | 815636 | 815728 |
| CDS | 816153 | 816272 |
| CDS | 817075 | 817185 |
| CDS | 817285 | 817410 |
| CDS | 817560 | 817652 |
| CDS | 817882 | 817962 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000228 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, clathrin_coat ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) clathrin_coat_assembly response to hormone stimulus, 1-phosphatidylinositol_binding clathrin_binding |
| coexpression network | CFinderM000813 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 175 | 362 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0005856 | cytoskeleton |
| GO:0005885 | Arp2/3 protein complex |
| GO:0030833 | regulation of actin filament polymerization |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.