PH01000265G0070's details annotation
1.Annotation
ICBR annotation: hydrolase, alpha/beta fold family protein, putative, expressed
Blast result AT2G36290 : 2.00E-119
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000265
Strand: -
| Region | Start | End |
| gene | 43466 | 45773 |
| mRNA | 43466 | 45773 |
| exon | 43466 | 43995 |
| exon | 44106 | 44367 |
| exon | 44462 | 44673 |
| exon | 44787 | 45773 |
| CDS | 43699 | 43995 |
| CDS | 44106 | 44367 |
| CDS | 44462 | 44673 |
| CDS | 44787 | 45038 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000210 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) RLK-Pelle_L-LEC (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) |
| coexpression network | CFinderM000366 | RLK-Pelle_LRR-XII-1 (from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12697.6 | Abhydrolase_6 | 66 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.