PH01000265G0640's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G09980 : 8.30E-48
Blast annotation: Family of unknown function (DUF662)
2.Location
Scaffold: PH01000265
Strand: +
| Region | Start | End |
| gene | 452076 | 453510 |
| mRNA | 452076 | 453510 |
| exon | 452076 | 452423 |
| exon | 452743 | 452853 |
| exon | 453027 | 453107 |
| exon | 453245 | 453510 |
| CDS | 452184 | 452423 |
| CDS | 452743 | 452853 |
| CDS | 453027 | 453107 |
| CDS | 453245 | 453319 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000182 | 3-deoxy-7-phosphoheptulonate synthase activity, aromatic amino acid family biosynthetic process, Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis Phenylalanine,_tyrosine_and_tryptophan_biosynthesis sphingolipid metabolic process, glucosylceramide catabolic process, GH116 Glycoside_Hydrolases Flavonoid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04949.12 | Transcrip_act | 28 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.