PH01000265G1050's details annotation
1.Annotation
ICBR annotation: amino acid kinase, putative, expressed
Blast result AT3G10030 : 4.00E-108
Blast annotation: aspartate/glutamate/uridylate kinase family protein
2.Location
Scaffold: PH01000265
Strand: -
| Region | Start | End |
| gene | 729361 | 733771 |
| mRNA | 729361 | 733771 |
| exon | 729361 | 729659 |
| exon | 729751 | 729915 |
| exon | 730090 | 730405 |
| exon | 730475 | 730483 |
| exon | 731288 | 731296 |
| exon | 731889 | 731942 |
| exon | 732030 | 732174 |
| exon | 732260 | 732690 |
| exon | 733110 | 733771 |
| CDS | 729562 | 729659 |
| CDS | 729751 | 729915 |
| CDS | 730090 | 730405 |
| CDS | 730475 | 730483 |
| CDS | 731288 | 731296 |
| CDS | 731889 | 731942 |
| CDS | 732030 | 732174 |
| CDS | 732260 | 732690 |
| CDS | 733110 | 733148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001154 | clathrin_coat RLK-Pelle_LysM (from iTAK) clathrin_coat_assembly Trihelix Transcription_Regulator(from PlantTFDB) cellular amino acid biosynthetic process, RLK-Pelle_SD-2b (from iTAK) clathrin_binding 1-phosphatidylinositol_binding |
| coexpression network | CFinderM001477 | BES1 Transcription_Regulator(from PlantTFDB) Trihelix Transcription_Regulator(from PlantTFDB) beta-amylase activity, binding, cellular amino acid biosynthetic process, polysaccharide catabolic process, |
| coexpression network | CFinderM001619 | RLK-Pelle_LysM (from iTAK) Trihelix Transcription_Regulator(from PlantTFDB) Mo-molybdopterin cofactor biosynthetic process, molybdopterin cofactor biosynthetic process, SOS_response 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, riboflavin biosynthetic process, Endocytosis Homologous_recombination |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 33 | 126 |
| PF00696.27 | AA_kinase | 247 | 394 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008652 | cellular amino acid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.