PH01000266G1030's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT5G06950 : 8.00E-114
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000266
Strand: +
| Region | Start | End |
| gene | 707034 | 711939 |
| mRNA | 707034 | 711939 |
| exon | 707034 | 707230 |
| exon | 708895 | 708972 |
| exon | 709057 | 709116 |
| exon | 709707 | 709784 |
| exon | 709865 | 709916 |
| exon | 710253 | 710524 |
| exon | 710753 | 710998 |
| exon | 711172 | 711939 |
| CDS | 707210 | 707230 |
| CDS | 708895 | 708972 |
| CDS | 709057 | 709116 |
| CDS | 709707 | 709784 |
| CDS | 709865 | 709916 |
| CDS | 710253 | 710524 |
| CDS | 710753 | 710998 |
| CDS | 711172 | 711318 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001401 | Plant_hormone_signal_transduction bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 33 | 73 |
| PF14144.5 | DOG1 | 115 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.