PH01000267G1150's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed
Blast result AT4G21560 : 5.70E-68
Blast annotation: vacuolar protein sorting-associated protein 28 homolog 1
2.Location
Scaffold: PH01000267
Strand: -
| Region | Start | End |
| gene | 630353 | 632810 |
| mRNA | 630353 | 632810 |
| exon | 630353 | 632810 |
| CDS | 631317 | 631955 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001236 | nicotinate-nucleotide diphosphorylase (carboxylating) activity, nicotinate phosphoribosyltransferase activity, NAD biosynthetic process, Endocytosis protein ubiquitination, ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03997.11 | VPS28 | 18 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | ESCRT-I complex subunit VPS28 | ko04144 | K12184 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.