PH01000267G1380's details annotation
1.Annotation
ICBR annotation: katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Blast result AT5G23430 : 1.00E-149
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000267
Strand: -
| Region | Start | End |
| gene | 754077 | 761321 |
| mRNA | 754077 | 761321 |
| exon | 754077 | 754209 |
| exon | 754703 | 754819 |
| exon | 755103 | 755215 |
| exon | 755297 | 755403 |
| exon | 756033 | 756132 |
| exon | 756178 | 756303 |
| exon | 756768 | 756904 |
| exon | 757157 | 757822 |
| exon | 757894 | 758065 |
| exon | 758144 | 758287 |
| exon | 758362 | 758436 |
| exon | 758893 | 758963 |
| exon | 759247 | 759576 |
| exon | 760115 | 760232 |
| exon | 760330 | 760378 |
| exon | 760962 | 761321 |
| CDS | 754140 | 754209 |
| CDS | 754703 | 754819 |
| CDS | 755103 | 755215 |
| CDS | 755297 | 755403 |
| CDS | 756033 | 756132 |
| CDS | 756178 | 756303 |
| CDS | 756768 | 756904 |
| CDS | 757157 | 757822 |
| CDS | 757894 | 758065 |
| CDS | 758144 | 758287 |
| CDS | 758362 | 758436 |
| CDS | 758893 | 758963 |
| CDS | 759247 | 759576 |
| CDS | 760115 | 760232 |
| CDS | 760330 | 760378 |
| CDS | 760962 | 761071 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
| coexpression network | CFinderM001088 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases katanin_complex microtubule_severing SNF2 Transcription_Regulator(from iTAK) Starch_and_sucrose_metabolism 4-alpha-glucanotransferase activity, starch_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 50 | 87 |
| PF00400.31 | WD40 | 93 | 129 |
| PF00400.31 | WD40 | 135 | 171 |
| PF00400.31 | WD40 | 175 | 213 |
| PF13925.5 | Katanin_con80 | 707 | 814 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008017 | microtubule binding |
| GO:0008352 | katanin complex |
| GO:0051013 | microtubule severing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.