PH01000268G0210's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed
Blast result AT3G62830 : 1.00E-142
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000268
Strand: +
| Region | Start | End |
| gene | 152294 | 157305 |
| mRNA | 152294 | 157305 |
| exon | 152294 | 154002 |
| exon | 155997 | 156076 |
| exon | 156177 | 156260 |
| exon | 156357 | 156431 |
| exon | 156773 | 157305 |
| CDS | 153441 | 154002 |
| CDS | 155997 | 156076 |
| CDS | 156177 | 156260 |
| CDS | 156357 | 156431 |
| CDS | 156773 | 157204 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001186 | Valine,_leucine_and_isoleucine_degradation Glycine,_serine_and_threonine_metabolism Zeatin_biosynthesis intramolecular transferase activity, phosphotransferases, oxoglutarate dehydrogenase (succinyl-transferring) activity, dihydrolipoyl dehydrogenase activity, sucrose synthase activity, thiamine pyrophosphate binding, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, mitochondrial outer membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16363.4 | GDP_Man_Dehyd | 61 | 143 |
| PF16363.4 | GDP_Man_Dehyd | 190 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.