PH01000268G0630's details annotation
1.Annotation
ICBR annotation: SYD, putative, expressed
Blast result AT2G28290 : 1.20E-32
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000268
Strand: -
| Region | Start | End |
| gene | 507248 | 512183 |
| mRNA | 507248 | 512183 |
| exon | 507248 | 507401 |
| exon | 507661 | 507846 |
| exon | 507954 | 508051 |
| exon | 508366 | 509231 |
| exon | 509309 | 509373 |
| exon | 509506 | 509705 |
| exon | 510175 | 510377 |
| exon | 510469 | 511191 |
| exon | 511276 | 511481 |
| exon | 511902 | 511963 |
| exon | 512045 | 512183 |
| CDS | 507377 | 507401 |
| CDS | 507661 | 507846 |
| CDS | 507954 | 508051 |
| CDS | 508366 | 509231 |
| CDS | 509309 | 509373 |
| CDS | 509506 | 509705 |
| CDS | 510175 | 510377 |
| CDS | 510469 | 511191 |
| CDS | 511276 | 511481 |
| CDS | 511902 | 511963 |
| CDS | 512045 | 512149 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000053 | CMGC_DYRK-PRP4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.