Annotation of co-expression genes

PH01000268G0950's details annotation

1.Annotation

ICBR annotation: NF-X1-type zinc finger protein, putative, expressed

Blast result AT1G10170 : 0.00E+00
Blast annotation: NF-X-like 1

2.Location

Scaffold: PH01000268
Strand: +

RegionStartEnd
gene727954731725
mRNA727954731725
exon727954731725
CDS728322731249

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)NF-X1
Transcription_Regulator(from PlantTFDB)NF-X1

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01422.16zf-NF-X1111126
PF01422.16zf-NF-X1164181
PF01422.16zf-NF-X1228245
PF01422.16zf-NF-X1286303
PF01422.16zf-NF-X1381398
PF01422.16zf-NF-X1438454
PF01422.16zf-NF-X1491506
PF01422.16zf-NF-X1528554

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.