PH01000269G0470's details annotation
1.Annotation
ICBR annotation: rhoGAP domain containing protein, expressed
Blast result AT4G03100 : 4.00E-110
Blast annotation: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
2.Location
Scaffold: PH01000269
Strand: -
| Region | Start | End |
| gene | 359054 | 362156 |
| mRNA | 359054 | 362156 |
| exon | 359054 | 359560 |
| exon | 359684 | 359839 |
| exon | 359935 | 360165 |
| exon | 361243 | 361362 |
| exon | 361493 | 361613 |
| exon | 361754 | 362156 |
| CDS | 359246 | 359560 |
| CDS | 359684 | 359839 |
| CDS | 359935 | 360165 |
| CDS | 361243 | 361362 |
| CDS | 361493 | 361613 |
| CDS | 361754 | 362073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00786.27 | PBD | 67 | 94 |
| PF00620.26 | RhoGAP | 130 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.