PH01000269G1020's details annotation
1.Annotation
ICBR annotation: F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed
Blast result AT5G67320 : 2.00E-158
Blast annotation: WD-40 repeat family protein
2.Location
Scaffold: PH01000269
Strand: +
| Region | Start | End |
| gene | 799766 | 806189 |
| mRNA | 799766 | 806189 |
| exon | 799766 | 800070 |
| exon | 800172 | 800218 |
| exon | 800658 | 800808 |
| exon | 801024 | 801087 |
| exon | 801369 | 801527 |
| exon | 801640 | 801761 |
| exon | 803866 | 803940 |
| exon | 804658 | 804711 |
| exon | 804796 | 804869 |
| exon | 805605 | 805679 |
| exon | 805772 | 806189 |
| CDS | 799999 | 800070 |
| CDS | 800172 | 800218 |
| CDS | 800658 | 800808 |
| CDS | 801024 | 801087 |
| CDS | 801369 | 801527 |
| CDS | 801640 | 801761 |
| CDS | 803866 | 803940 |
| CDS | 804658 | 804711 |
| CDS | 804796 | 804869 |
| CDS | 805605 | 805679 |
| CDS | 805772 | 805991 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001873 | GT47 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 15 | 49 |
| PF00400.31 | WD40 | 71 | 109 |
| PF00400.31 | WD40 | 115 | 150 |
| PF00400.31 | WD40 | 197 | 233 |
| PF00400.31 | WD40 | 238 | 283 |
| PF00400.31 | WD40 | 288 | 326 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.