PH01000270G1170's details annotation
1.Annotation
ICBR annotation: fumarylacetoacetase, putative, expressed
Blast result AT1G12050 : 4.20E-47
Blast annotation: fumarylacetoacetase, putative
2.Location
Scaffold: PH01000270
Strand: -
| Region | Start | End |
| gene | 831183 | 838591 |
| mRNA | 831183 | 838591 |
| exon | 831183 | 831412 |
| exon | 831782 | 831856 |
| exon | 833281 | 833356 |
| exon | 833731 | 833805 |
| exon | 834177 | 834301 |
| exon | 834391 | 834449 |
| exon | 838405 | 838591 |
| CDS | 831308 | 831412 |
| CDS | 831782 | 831856 |
| CDS | 833281 | 833356 |
| CDS | 833731 | 833805 |
| CDS | 834177 | 834301 |
| CDS | 834391 | 834449 |
| CDS | 838405 | 838474 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01557.17 | FAA_hydrolase | 57 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004334 | fumarylacetoacetase activity |
| GO:0008152 | metabolic process |
| GO:0009072 | aromatic amino acid family metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.