PH01000271G0990's details annotation
1.Annotation
ICBR annotation: heavy metal-associated domain containing protein, expressed
Blast result AT3G24450 : 1.70E-19
Blast annotation: Heavy metal transport/detoxification superfamily protein
2.Location
Scaffold: PH01000271
Strand: +
| Region | Start | End |
| gene | 699345 | 701576 |
| mRNA | 699345 | 701576 |
| exon | 699345 | 701037 |
| exon | 701151 | 701576 |
| CDS | 700831 | 701037 |
| CDS | 701151 | 701252 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000614 | protein processing, ATP biosynthetic process, ATP_catabolic_process plant-type cell wall organization, GH28 Glycoside_Hydrolases extracellular region, integral to membrane, Phosphatidylinositol_signaling_system Oxidative_phosphorylation |
| coexpression network | CFinderM000815 | GH28 Glycoside_Hydrolases RLK-Pelle_RLCK-V (from iTAK) ATP biosynthetic process, ATP_catabolic_process Oxidative_phosphorylation metal ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00403.25 | HMA | 73 | 97 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.