PH01000271G1240's details annotation
1.Annotation
ICBR annotation: plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000271
Strand: -
| Region | Start | End |
| gene | 848341 | 854664 |
| mRNA | 848341 | 854664 |
| exon | 848341 | 849937 |
| exon | 850064 | 850450 |
| exon | 850674 | 850723 |
| exon | 851104 | 851218 |
| exon | 851507 | 851569 |
| exon | 851652 | 851810 |
| exon | 852833 | 852977 |
| exon | 853063 | 853447 |
| exon | 853722 | 854664 |
| CDS | 849842 | 849937 |
| CDS | 850064 | 850450 |
| CDS | 850674 | 850723 |
| CDS | 851104 | 851218 |
| CDS | 851507 | 851569 |
| CDS | 851652 | 851810 |
| CDS | 852833 | 852977 |
| CDS | 853063 | 853447 |
| CDS | 853722 | 853884 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09598.9 | Stm1_N | 1 | 68 |
| PF04774.14 | HABP4_PAI-RBP1 | 147 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.