PH01000272G0520's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.26 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT1G76040 : 6.00E-150
Blast annotation: calcium-dependent protein kinase 29
2.Location
Scaffold: PH01000272
Strand: -
| Region | Start | End |
| gene | 311270 | 315068 |
| mRNA | 311270 | 315068 |
| exon | 311270 | 311619 |
| exon | 311689 | 311788 |
| exon | 312039 | 312166 |
| exon | 312245 | 312412 |
| exon | 312480 | 312592 |
| exon | 312918 | 313061 |
| exon | 314144 | 315068 |
| CDS | 311572 | 311619 |
| CDS | 311689 | 311788 |
| CDS | 312039 | 312166 |
| CDS | 312245 | 312412 |
| CDS | 312480 | 312592 |
| CDS | 312918 | 313061 |
| CDS | 314144 | 314630 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000707 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001293 | CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 8 | 213 |
| PF13499.5 | EF-hand_7 | 262 | 322 |
| PF13499.5 | EF-hand_7 | 332 | 394 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005509 | calcium ion binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.