PH01000272G0590's details annotation
1.Annotation
ICBR annotation: monocopper oxidase, putative, expressed
Blast result AT1G76160 : 0.00E+00
Blast annotation: SKU5 similar 5
2.Location
Scaffold: PH01000272
Strand: +
| Region | Start | End |
| gene | 353002 | 357266 |
| mRNA | 353002 | 357266 |
| exon | 353002 | 353426 |
| exon | 353977 | 354226 |
| exon | 354344 | 354457 |
| exon | 355093 | 355453 |
| exon | 355616 | 355961 |
| exon | 355999 | 356427 |
| exon | 356547 | 356625 |
| exon | 356739 | 357266 |
| CDS | 353374 | 353426 |
| CDS | 353977 | 354226 |
| CDS | 354344 | 354457 |
| CDS | 355093 | 355453 |
| CDS | 355616 | 355961 |
| CDS | 355999 | 356427 |
| CDS | 356547 | 356625 |
| CDS | 356739 | 356960 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07732.14 | Cu-oxidase_3 | 88 | 198 |
| PF00394.21 | Cu-oxidase | 211 | 347 |
| PF07731.13 | Cu-oxidase_2 | 456 | 586 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.