PH01000272G0900's details annotation
1.Annotation
ICBR annotation: transmembrane protein, putative, expressed
Blast result AT4G38360 : 6.60E-65
Blast annotation: Protein of unknown function (DUF300)
2.Location
Scaffold: PH01000272
Strand: -
| Region | Start | End |
| gene | 598020 | 606649 |
| mRNA | 598020 | 606649 |
| exon | 598020 | 599562 |
| exon | 599720 | 600008 |
| exon | 600293 | 600358 |
| exon | 601566 | 601654 |
| exon | 602723 | 602779 |
| exon | 602830 | 606649 |
| CDS | 599245 | 599562 |
| CDS | 599720 | 600008 |
| CDS | 600293 | 600358 |
| CDS | 601566 | 601654 |
| CDS | 602723 | 602779 |
| CDS | 602830 | 603066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001056 | RLK-Pelle_LRR-III (from iTAK) RLK-Pelle_URK-1 (from iTAK) protein phosphorylation, transferase activity, transferring phosphorus-containing groups, protein kinase activity, ATP binding, |
| coexpression network | CFinderM001446 | RLK-Pelle_LRR-III (from iTAK) membrane, ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03619.15 | Solute_trans_a | 99 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.