Annotation of co-expression genes

PH01000274G0820's details annotation

1.Annotation

ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed

Blast result AT5G45910 : 7.50E-85
Blast annotation: GDSL-like Lipase/Acylhydrolase superfamily protein

2.Location

Scaffold: PH01000274
Strand: -

RegionStartEnd
gene565966568931
mRNA565966568931
exon565966566388
exon567502567775
exon567975568123
exon568250568456
exon568572568931
CDS566168566388
CDS567502567775
CDS567975568123
CDS568250568456
CDS568572568794

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000644NAC Transcription_Regulator(from PlantTFDB)
regulation of transcription, DNA-dependent,
Trihelix Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00657.21Lipase_GDSL27342

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006629lipid metabolic process
GO:0016787hydrolase activity
GO:0016788hydrolase activity, acting on ester bonds

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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