PH01000276G0150's details annotation
1.Annotation
ICBR annotation: ubiquitin interaction motif family protein, expressed
Blast result AT4G11860 : 1.00E-132
Blast annotation: Protein of unknown function (DUF544)
2.Location
Scaffold: PH01000276
Strand: -
| Region | Start | End |
| gene | 98734 | 104260 |
| mRNA | 98734 | 104260 |
| exon | 98734 | 99313 |
| exon | 99563 | 99743 |
| exon | 100485 | 100534 |
| exon | 100616 | 100720 |
| exon | 100807 | 100887 |
| exon | 100969 | 101050 |
| exon | 101134 | 101188 |
| exon | 101304 | 102339 |
| exon | 103338 | 103425 |
| exon | 103508 | 103632 |
| exon | 103716 | 103834 |
| exon | 103958 | 104260 |
| CDS | 99290 | 99313 |
| CDS | 99563 | 99743 |
| CDS | 100485 | 100534 |
| CDS | 100616 | 100720 |
| CDS | 100807 | 100887 |
| CDS | 100969 | 101050 |
| CDS | 101134 | 101188 |
| CDS | 101304 | 102339 |
| CDS | 103338 | 103425 |
| CDS | 103508 | 103632 |
| CDS | 103716 | 103834 |
| CDS | 103958 | 104123 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001237 | |
| coexpression network | CFinderM001526 | protein catabolic process, |
| coexpression network | CFinderM001859 | protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04424.12 | MINDY_DUB | 56 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.