PH01000276G0310's details annotation
1.Annotation
ICBR annotation: B-box zinc finger family protein, putative, expressed
Blast result AT1G75540 : 1.00E-36
Blast annotation: salt tolerance homolog2
2.Location
Scaffold: PH01000276
Strand: -
| Region | Start | End |
| gene | 214554 | 216768 |
| mRNA | 214554 | 216768 |
| exon | 214554 | 214964 |
| exon | 215057 | 215389 |
| exon | 215467 | 216768 |
| CDS | 214680 | 214964 |
| CDS | 215057 | 215389 |
| CDS | 215467 | 215667 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000093 | NAC Transcription_Regulator(from PlantTFDB) GH79 Glycoside_Hydrolases DBB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
| Transcription_Regulator(from PlantTFDB) | DBB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00643.23 | zf-B_box | 4 | 47 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.