PH01000276G1110's details annotation
1.Annotation
ICBR annotation: heat shock protein, putative, expressed
Blast result AT4G24190 : 0.00E+00
Blast annotation: Chaperone protein htpG family protein
2.Location
Scaffold: PH01000276
Strand: -
| Region | Start | End |
| gene | 711945 | 718652 |
| mRNA | 711945 | 718652 |
| exon | 711945 | 712249 |
| exon | 712341 | 712745 |
| exon | 713110 | 713260 |
| exon | 713346 | 713484 |
| exon | 713566 | 713731 |
| exon | 713817 | 714032 |
| exon | 714162 | 714343 |
| exon | 714434 | 714548 |
| exon | 715692 | 715817 |
| exon | 715966 | 716063 |
| exon | 716158 | 716161 |
| exon | 716451 | 716589 |
| exon | 716706 | 716832 |
| exon | 717001 | 717112 |
| exon | 717212 | 717292 |
| exon | 717377 | 717530 |
| exon | 717620 | 717740 |
| exon | 718383 | 718652 |
| CDS | 712004 | 712249 |
| CDS | 712341 | 712745 |
| CDS | 713110 | 713260 |
| CDS | 713346 | 713484 |
| CDS | 713566 | 713731 |
| CDS | 713817 | 714032 |
| CDS | 714162 | 714343 |
| CDS | 714434 | 714548 |
| CDS | 715692 | 715817 |
| CDS | 715966 | 716063 |
| CDS | 716158 | 716161 |
| CDS | 716451 | 716589 |
| CDS | 716706 | 716832 |
| CDS | 717001 | 717112 |
| CDS | 717212 | 717292 |
| CDS | 717377 | 717530 |
| CDS | 717620 | 717740 |
| CDS | 718383 | 718533 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000747 | microtubule, protein complex, microtubule-based process, protein polymerization, |
| coexpression network | CFinderM000749 | Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis protein glycosylation, GT66 GlycosylTransferases Protein_processing_in_endoplasmic_reticulum oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity, response to stress, |
| coexpression network | CFinderM001561 | GT48 GlycosylTransferases HB-KNOX Transcription_Regulator(from iTAK) TKL-Pl-6 (from iTAK) TALE Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02518.25 | HATPase_c | 129 | 284 |
| PF00183.17 | HSP90 | 363 | 897 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0006950 | response to stress |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.