PH01000276G1150's details annotation
1.Annotation
ICBR annotation: E2F-related protein, putative, expressed
Blast result AT2G17840 : 1.40E-53
Blast annotation: Senescence/dehydration-associated protein-related
2.Location
Scaffold: PH01000276
Strand: -
| Region | Start | End |
| gene | 728921 | 733649 |
| mRNA | 728921 | 733649 |
| exon | 728921 | 730174 |
| exon | 730570 | 730879 |
| exon | 732008 | 732193 |
| exon | 732382 | 732466 |
| exon | 733239 | 733649 |
| CDS | 729347 | 730174 |
| CDS | 730570 | 730879 |
| CDS | 732008 | 732193 |
| CDS | 732382 | 732466 |
| CDS | 733239 | 733386 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06911.11 | Senescence | 2 | 109 |
| PF07716.14 | bZIP_2 | 343 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.