PH01000277G0820's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT2G33860 : 8.00E-108
Blast annotation: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
2.Location
Scaffold: PH01000277
Strand: -
| Region | Start | End |
| gene | 693525 | 698815 |
| mRNA | 693525 | 698815 |
| exon | 693525 | 694586 |
| exon | 694682 | 694844 |
| exon | 695597 | 695672 |
| exon | 695746 | 695862 |
| exon | 696155 | 696319 |
| exon | 696401 | 696491 |
| exon | 697286 | 697370 |
| exon | 697468 | 697650 |
| exon | 698136 | 698192 |
| exon | 698475 | 698815 |
| CDS | 693802 | 694586 |
| CDS | 694682 | 694844 |
| CDS | 695597 | 695672 |
| CDS | 695746 | 695862 |
| CDS | 696155 | 696319 |
| CDS | 696401 | 696491 |
| CDS | 697286 | 697370 |
| CDS | 697468 | 697650 |
| CDS | 698136 | 698192 |
| CDS | 698475 | 698528 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 69 | 169 |
| PF06507.12 | Auxin_resp | 196 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.