Annotation of co-expression genes

PH01000278G0580's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT3G30180 : 6.00E-169
Blast annotation: brassinosteroid-6-oxidase 2

2.Location

Scaffold: PH01000278
Strand: +

RegionStartEnd
gene503019506969
mRNA503019506969
exon503019503384
exon503990504311
exon505083505232
exon505349505597
exon505690505776
exon505862505940
exon506031506137
exon506229506353
exon506440506969
CDS503194503384
CDS503990504311
CDS505083505232
CDS505349505597
CDS505690505776
CDS505862505940
CDS506031506137
CDS506229506353
CDS506440506569

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000047isomerase activity,
Brassinosteroid_biosynthesis
carbohydrate metabolic process,
carbohydrate binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45035445

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Brassinosteroid biosynthesiscytochrome P450, family 85, subfamily A, polypeptide 2[EC:1.14.13.-]ko00905K12640

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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