PH01000279G0700's details annotation
1.Annotation
ICBR annotation: DDT, putative, expressed
Blast result AT4G12750 : 2.00E-102
Blast annotation: Homeodomain-like transcriptional regulator
2.Location
Scaffold: PH01000279
Strand: -
| Region | Start | End |
| gene | 599573 | 614441 |
| mRNA | 599573 | 614441 |
| exon | 599573 | 599667 |
| exon | 600521 | 600746 |
| exon | 600868 | 600972 |
| exon | 601161 | 601781 |
| exon | 601897 | 601957 |
| exon | 601994 | 602256 |
| exon | 602715 | 603290 |
| exon | 604886 | 605341 |
| exon | 605457 | 605579 |
| exon | 605761 | 605901 |
| exon | 607118 | 607204 |
| exon | 610269 | 610369 |
| exon | 610453 | 610669 |
| exon | 610864 | 610926 |
| exon | 611040 | 611270 |
| exon | 611937 | 611995 |
| exon | 612654 | 613091 |
| exon | 613180 | 613270 |
| exon | 614069 | 614441 |
| CDS | 599648 | 599667 |
| CDS | 600521 | 600746 |
| CDS | 600868 | 600972 |
| CDS | 601161 | 601781 |
| CDS | 601897 | 601957 |
| CDS | 601994 | 602256 |
| CDS | 602715 | 603290 |
| CDS | 604886 | 605341 |
| CDS | 605457 | 605579 |
| CDS | 605761 | 605901 |
| CDS | 607118 | 607204 |
| CDS | 610269 | 610369 |
| CDS | 610453 | 610669 |
| CDS | 610864 | 610926 |
| CDS | 611040 | 611270 |
| CDS | 611937 | 611995 |
| CDS | 612654 | 613091 |
| CDS | 613180 | 613270 |
| CDS | 614069 | 614083 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM001298 | HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001552 | HB-other Transcription_Regulator(from PlantTFDB) Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB) tRNA_3'-trailer_cleavage endoribonuclease activity, producing 5'-phosphomonoesters, regulation of transcription, DNA-dependent, sequence-specific DNA binding, RNA_transport sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 20 | 72 |
| PF15612.5 | WHIM1 | 633 | 663 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.