Annotation of co-expression genes

PH01000279G0930's details annotation

1.Annotation

ICBR annotation: CRP7 - Cysteine-rich family protein precursor, expressed

Blast result AT1G65295 : 6.20E-28
Blast annotation: -

2.Location

Scaffold: PH01000279
Strand: -

RegionStartEnd
gene784155785867
mRNA784155785867
exon784155785428
exon785507785867
CDS785135785428
CDS785507785617

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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