PH01000281G0890's details annotation
1.Annotation
ICBR annotation: B3 DNA binding domain containing protein, expressed
Blast result AT3G25730 : 3.20E-78
Blast annotation: ethylene response DNA binding factor 3
2.Location
Scaffold: PH01000281
Strand: +
| Region | Start | End |
| gene | 558435 | 560075 |
| mRNA | 558435 | 560075 |
| exon | 558435 | 560075 |
| CDS | 558697 | 559767 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000086 | RAV Transcription_Regulator(from PlantTFDB) AP2/ERF-RAV Transcription_Regulator(from iTAK) GH16 Glycoside_Hydrolases cell wall, apoplast, xyloglucan:xyloglucosyl transferase activity, drug transmembrane transporter activity, antiporter activity, |
| coexpression network | CFinderM000087 | AP2/ERF-RAV Transcription_Regulator(from iTAK) RAV Transcription_Regulator(from PlantTFDB) Valine,_leucine_and_isoleucine_degradation Chloroalkane_and_chloroalkene_degradation Lysine_degradation Tryptophan_metabolism Propanoate_metabolism beta-Alanine_metabolism Limonene_and_pinene_degradation Histidine_metabolism Pentose_and_glucuronate_interconversions Fatty_acid_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism antiporter activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, drug transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-RAV |
| Transcription_Regulator(from PlantTFDB) | RAV |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 64 | 112 |
| PF02362.20 | B3 | 179 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.