Annotation of co-expression genes

PH01000281G1050's details annotation

1.Annotation

ICBR annotation: peptide transporter PTR2, putative, expressed

Blast result AT3G54140 : 7.00E-153
Blast annotation: peptide transporter 1

2.Location

Scaffold: PH01000281
Strand: +

RegionStartEnd
gene679532683324
mRNA679532683324
exon679532679873
exon679963680180
exon680281683324
CDS679765679873
CDS679963680180
CDS680281681693

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000274Arachidonic_acid_metabolism
oligopeptide transport,
L-serine metabolic process,
glycine metabolic process,
Glutathione_metabolism
coexpression networkCFinderM000756Terpenoid_backbone_biosynthesis
1-deoxy-D-xylulose-5-phosphate synthase activity,
terpenoid biosynthetic process,
oligopeptide transport,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00854.20PTR297371

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0006857oligopeptide transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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