PH01000284G0980's details annotation
1.Annotation
ICBR annotation: S4 domain containing protein, putative, expressed
Blast result AT1G53120 : 6.40E-44
Blast annotation: RNA-binding S4 domain-containing protein
2.Location
Scaffold: PH01000284
Strand: +
| Region | Start | End |
| gene | 591580 | 603932 |
| mRNA | 591580 | 603932 |
| exon | 591580 | 591780 |
| exon | 591857 | 591966 |
| exon | 592754 | 592894 |
| exon | 592980 | 593093 |
| exon | 593723 | 593787 |
| exon | 593900 | 593998 |
| exon | 597226 | 597366 |
| exon | 598325 | 598406 |
| exon | 599172 | 599316 |
| exon | 599877 | 600061 |
| exon | 601115 | 601192 |
| exon | 601651 | 601830 |
| exon | 602116 | 602160 |
| exon | 602192 | 602281 |
| exon | 602313 | 602480 |
| exon | 602762 | 602843 |
| exon | 602977 | 603932 |
| CDS | 591681 | 591780 |
| CDS | 591857 | 591966 |
| CDS | 592754 | 592894 |
| CDS | 592980 | 593093 |
| CDS | 593723 | 593787 |
| CDS | 593900 | 593998 |
| CDS | 597226 | 597366 |
| CDS | 598325 | 598406 |
| CDS | 599172 | 599316 |
| CDS | 599877 | 600061 |
| CDS | 601115 | 601192 |
| CDS | 601651 | 601830 |
| CDS | 602116 | 602160 |
| CDS | 602192 | 602281 |
| CDS | 602313 | 602480 |
| CDS | 602762 | 602843 |
| CDS | 602977 | 603200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00805.21 | Pentapeptide | 619 | 654 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.